Software Engineer III - AI/ML Infrastructure in Biology

Software Engineer III - AI/ML Infrastructure in BiologyJoin to apply for the Software Engineer III - AI/ML Infrastructure in Biology role at Allen InstituteSoftware Engineer III - AI/ML Infrastructure in BiologyJoin to apply for the Software Engineer III - AI/ML Infrastructure in Biology role at Allen InstituteSW Engineer III - AI/ML Infrastructure in BiologyTheSW Engineer III - AI/ML Infrastructure in BiologyThe mission of the Allen Institute is to unlock the complexities of bioscience and advance our knowledge to improve human health. Using an open science, multi-scale, team-oriented approach, the Allen Institute focuses on accelerating foundational research, developing standards and models, and cultivating new ideas to make a broad, transformational impact on science.The mission of the Office of the Chief Technology Officer (CTO) is not only to provide state of the art engineering infrastructure to the Allen Institute as a whole, but to also address high-risk, high-reward questions in biology through AI.We are seeking an independent and motivated Machine Learning (ML) engineer in the Office of the CTO AI Applications group. This position will work closely with AI researchers, scientists and engineering teams to build large AI/ML models for Biology and the computational infrastructure to support these models. The role is also expected to work collaboratively across all the Allen Institute teams including Brain Science, Cell Science, Immunology, Neural Dynamics, and the Seattle Hub for Synthetic Biology.At the Allen Institute, we believe that science is for everyone – and should be open to everyone. We are dedicated to combating biases and reducing barriers to STEM careers more broadly.We also believe that science is better when it includes different perspectives and voices. We strive to make the Allen Institute a place where everyone feels like they belong and are empowered to do their best work in a supportive environment.We are an equal-opportunity employer and strongly encourage people from all backgrounds to apply for our open positions.Essential FunctionsAssist the development of state-of-the-art engineering infrastructure at the Allen Institute to support AI/ML research and applicationsEnable data management, software infrastructure and AI/ML workflow best practices and policiesBuild tooling to enable model development and scale across many GPUs and across multiple cloudsCollaborate with teams of scientists, computational biologists, PMs, UX researchers and software engineers within the Allen Institute and external partnersHelp establish community standards for scalability in developing, disseminating, and evaluating AI/ML/computational methods for scientific problemsParticipate in institute-wide initiatives, workshops, and seminars to promote engineering excellence through technical leadership, cross-disciplinary collaboration and knowledge sharingNote: Reasonable accommodations may be made to enable individuals with disabilities to perform the essential functions. This description reflects management’s assignment of essential functions; it does not proscribe or restrict the tasks that may be assigned.Required Education And ExperienceBachelor’s Degree in Computer Science or related technical field or equivalent experience2-5 years of experience working with MLOps in medium to large scale GPU clusters and/or cloud based ML deploymentsPreferred Education And ExperienceExperience with building, deploying and maintaining machine learning modelsProficiency with cloud computing (AWS, GCP or Azure) and with on-prem clustersExperience with databases, large data managementWorking knowledge of AI/ML custom libraries, AI/ML execution platformsProven ability to work independently and manage multiple projects simultaneously while meeting deadlinesExcellent written and verbal communication skills, with the ability to collaborate effectively in a multidisciplinary team environmentPhysical DemandsFine motor movements in fingers/hands to operate computers and other office equipmentPosition Type/Expected Hours of WorkThis role is currently able to work both remotely and onsite in a hybrid work environment. We are a Washington State employer, and the primary work location for all Allen Institute employees is 615 Westlake Ave N.; any remote work must be performed in Washington State.TravelAttendance and participation in national and international conferences as appropriateAdditional Comments**Please note, this opportunity does not offer relocation assistance****Please note, this opportunity does not offer work visa sponsorship**Annualized Salary Range$144,450 - $180,550Final salary depends on the required education for the role, experience, level of skills relevant to the role, and work location, where applicable.BenefitsEmployees (and their families) are eligible to enroll in benefits per eligibility rules outlined in the Allen Institute’s Benefits Guide. These benefits include medical, dental, vision, and basic life insurance. Employees are also eligible to enroll in the Allen Institute’s 401k plan. Paid time off is also available as outlined in the Allen Institutes Benefits Guide. Details on the Allen Institute’s benefits offering are located at the following link to the Benefits Guide:? .It is the policy of the Allen Institute to provide equal employment opportunity (EEO) to all persons regardless of age, color, national origin, citizenship status, physical or mental disability, race, religion, creed, gender, sex, sexual orientation, gender identity and/or expression, genetic information, marital status, status with regard to public assistance, veteran status, or any other characteristic protected by federal, state or local law. In addition, the Allen Institute will provide reasonable accommodations for qualified individuals with disabilities.Seniority levelSeniority levelMid-Senior levelEmployment typeEmployment typeFull-timeJob functionJob functionEngineering and Information TechnologyIndustriesBiotechnology Research, Research Services, and Non-profit OrganizationsReferrals increase your chances of interviewing at Allen Institute by 2xGet notified about new Software Engineer jobs in Seattle, WA.Redmond, WA $100,600.00-$215,400.00 2 days agoRedmond, WA $84,200.00-$180,400.00 4 days agoSeattle, WA $120,300.00-$168,700.00 4 days agoSeattle, WA $100,000.00-$720,000.00 1 week agoSeattle, WA $140,000.00-$250,000.00 2 weeks agoSoftware Engineer III, Full Stack, ChromeSeattle, WA $141,000.00-$202,000.00 3 days agoSeattle, WA $140,000.00-$180,000.00 2 months agoSoftware Engineer - New Grad (2026 Start)Seattle, WA $110,400.00-$138,000.00 1 week agoBellevue, WA $157,000.00-$230,000.00 1 day agoSeattle, WA $140,000.00-$180,000.00 2 months agoSoftware Engineer, GCE, Virtual I/O NetworkingSeattle, WA $141,000.00-$202,000.00 2 weeks agoSoftware Engineer, Backend (Staff & SWE II) - SlackSeattle, WA $157,600.00-$334,600.00 1 day agoSoftware Engineer: Frontend Intern Opportunities for University Students, RedmondRedmond, WA $11,010.00-$12,030.00 2 weeks agoSeattle, WA $140,000.00-$250,000.00 2 weeks agoSoftware Engineer, Sharing and Connections AnalyticsKirkland, WA $141,000.00-$202,000.00 2 days agoSoftware Engineer - New Grad, Distributed Data Systems (2026 Start)Seattle, WA $73,700.00-$158,200.00 4 days agoSoftware Engineer III, Full Stack, Google AdsKirkland, WA $141,000.00-$202,000.00 4 days agoRedmond, WA $100,600.00-$215,400.00 2 days agoSeattle, WA $130,000.00-$200,000.00 1 day agoWe’re unlocking community knowledge in a new way. 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Created: 2025-09-17